Researcher Information

GOPALASINGAM Chandru Chai

Assistant Professor

Elucidating membrane bound enzyme mechanism and dynamics

Department of Chemistry, Organic and Biological Chemistry

basic_photo_1
Theme

Decipher, capture and understand enzyme reaction intermediates via biochemical and 3D structural approaches

FieldStructural Biology, Biochemistry, Bioinorganic Chemistry
KeywordMembrane Proteins, Metalloenzyme, Respiratory enzymes, X-ray crystallography, Cryogenic Transmission Electron Microscopy (Single Particle Analysis)

Introduction of Research

During enzyme catalysis, the initial substrate can undergo a number of changes at the active site and transform into a product, analogous to atomic level origami. The elucidation of the so called intermediates are critical in understanding enzymatic function and can help us design bio-inspired catalysts or new inhibitors against pathogens. I aim to chemically define and capture intermediates of membrane bound enzymes (i.e., ATPases, oxidoreductases) 'at work' using biochemical, spectroscopic and advanced structural biology. Capturing and visualising proteins during intermediate states will allow ‘molecular movies’ of biological complexes to be made, bringing unprecedented insight into protein function at a chemical level to enhance the fields of novel pharmaceutical, therapeutic and catalyst development.

Representative Achievements

Z. Liao, C.C. Gopalasingam, M. Kameya, C. Gerle, H. Shigematsu, M. Ishii, T. Arakawa, S. Fushinobu. “Structural insights into thermophilic chaperonin complexes” Structure (2024), Mar 6:S0969-2126(24)00051-0.
K. Abe, M. Ozako, M. Inukai, Y. Matsuyuki, S. Kitayama, C. Kanai, C. Nagai, C.C. Gopalasingam, C. Gerle, H. Shigematsu, N. Umekubo, S. Yokoshima, A. Yoshimori. “Deep learning driven de novo drug design based on gastric proton pump structures”, Communications Biology, (2023), 6:956
C.C. Gopalasingam & S.S. Hasnain. “Frontiers in metalloprotein crystallography and cryoEM”, Current Opinion in Structural Biology, (2022), 75:102420
M.A.M. Jamali, C.C. Gopalasingam, R.M. Johnson, T. Tosha, K. Muramoto, S.P. Muench, S. V Antonyuk, Y. Shiro, S.S. Hasnain. “The active form of quinol-dependent nitric oxide reductase from Neisseria meningitidis is a dimer”, International Union of Crystallography Journal (2020), 7:1–12
C.C. Gopalasingam, R.M. Johnson, G.N. Chiduza, T. Tosha, M. Yamamoto, Y. Shiro, S. V. Antonyuk, S.P. Muench, S.S. Hasnain. “Dimeric structures of quinol-dependent nitric oxide reductases (qNORs) revealed by cryo–electron microscopy”, Science Advances (2019), 5:eaax1803.
Academic degreePh.D.
Self Introduction

I was born in London, U.K. and came to Japan in 2016 as part of the RIKEN International Programme Associate Ph.D. program. I have worked on elucidating the structure and function of membrane bound metalloenzymes, involved in detoxification of nitric oxide, using X-ray crystallography and single particle cryo-EM. Like a typical Brit, I like football and beer, as well as trying to recreate international cuisine in my home.

Academic background2014 B. Sc., School of Biosciences, University of Birmingham, U.K.
2015 Research Assistant, Membrane Protein Laboratory, Imperial College London, U.K.
2020 Ph.D., School of Life Sciences, University of Liverpool, U.K. (2016-2018 in RIKEN SPring-8 Center, Japan)
2022 Postdoctoral Researcher, Graduate School of Science, Hyogo Prefectural University, Japan
2024 Specially Appointed Postdoctoral Researcher, Life Instrumentation Unit, RIKEN SPring-8 Center, Japan
2024.12 - Assistant Professor, Department of Chemistry, Hokkaido University
s
Room addressScience Building 7 7-207
basic_photo_1

Belongs